BLASTP 2.2.25 [Feb-01-2011]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SODEF17
(71 letters)
Database: pdb_seqres.txt
277,869 sequences; 67,535,678 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
2ksk_A mol:protein length:71 Sugarcane defensin 5 149 8e-49
1gps_A mol:protein length:47 GAMMA-1-P THIONIN 37 3e-04
1gpt_A mol:protein length:47 GAMMA-1-H THIONIN 35 7e-04
4cqk_N mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_M mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_L mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_K mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_J mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_I mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_H mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_G mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_F mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_E mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_D mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_C mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_B mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4cqk_A mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4ab0_B mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4ab0_A mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4aaz_B mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
4aaz_A mol:protein length:47 FLOWER-SPECIFIC DEFENSIN 35 0.001
1mr4_A mol:protein length:47 Nicotiana alata plant defensin 1 (... 35 0.001
2lj7_A mol:protein length:47 Defensin Lc-def 30 0.061
>2ksk_A mol:protein length:71 Sugarcane defensin 5
Length = 71
Score = 149 bits (377), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRE 60
HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRE
Sbjct: 1 HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRE 60
Query: 61 RAAATLRWPGL 71
RAAATLRWPGL
Sbjct: 61 RAAATLRWPGL 71
>1gps_A mol:protein length:47 GAMMA-1-P THIONIN
Length = 47
Score = 36.6 bits (83), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 8 ICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
IC+ RS +KG C+ + +C C + E + GG C+G PF++C C + C
Sbjct: 2 ICRRRSAGFKGPCMSNKNCAQVC--QQEGWGGGNCDG--PFRRCKCIRQC 47
>1gpt_A mol:protein length:47 GAMMA-1-H THIONIN
Length = 47
Score = 35.4 bits (80), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 8 ICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
IC+ RS +KG C+ + +C C++ E + GG C+G P ++C C + C
Sbjct: 2 ICRRRSAGFKGPCVSNKNCAQVCMQ--EGWGGGNCDG--PLRRCKCMRRC 47
>4cqk_N mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_M mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_L mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_K mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_J mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_I mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_H mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_G mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_F mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_E mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_D mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_C mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_B mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_A mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4ab0_B mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4ab0_A mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4aaz_B mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4aaz_A mol:protein length:47 FLOWER-SPECIFIC DEFENSIN
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>1mr4_A mol:protein length:47 Nicotiana alata plant defensin 1
(NaD1)
Length = 47
Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
CK+ S+ + G CI C AC+ SE +T G C+ ++C CTKPC
Sbjct: 3 CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>2lj7_A mol:protein length:47 Defensin Lc-def
Length = 47
Score = 30.4 bits (67), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 9 CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
C++ S +KG CI D +CN C KE E G C R F+ C+CT+ C
Sbjct: 3 CENLSDSFKGPCIPDGNCNKHC-KEKEHLLSGRC--RDDFR-CWCTRNC 47
Database: pdb_seqres.txt
Posted date: May 7, 2014 5:37 PM
Number of letters in database: 67,535,678
Number of sequences in database: 277,869
Lambda K H
0.323 0.136 0.486
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 277869
Number of Hits to DB: 11,767,547
Number of extensions: 502269
Number of successful extensions: 444
Number of sequences better than 1.0e-01: 25
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 25
Length of query: 71
Length of database: 67,535,678
Length adjustment: 41
Effective length of query: 30
Effective length of database: 56,143,049
Effective search space: 1684291470
Effective search space used: 1684291470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)