BLASTP 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= SODEF17
         (71 letters)

Database: pdb_seqres.txt 
           367,451 sequences; 90,237,850 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

2ksk_A mol:protein length:71  Sugarcane defensin 5                    149   3e-47
4uj0_B mol:protein length:49  FLOWER-SPECIFIC GAMMA-THIONIN-LIKE...    38   2e-04
4uj0_A mol:protein length:49  FLOWER-SPECIFIC GAMMA-THIONIN-LIKE...    38   2e-04
1gps_A mol:protein length:47  GAMMA-1-P THIONIN                        37   7e-04
1gpt_A mol:protein length:47  GAMMA-1-H THIONIN                        35   0.001
4cqk_N mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_M mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_L mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_K mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_J mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_I mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_H mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_G mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_F mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_E mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_D mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_C mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_B mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4cqk_A mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4ab0_B mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4ab0_A mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4aaz_B mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
4aaz_A mol:protein length:47  FLOWER-SPECIFIC DEFENSIN                 35   0.002
1mr4_A mol:protein length:47  Nicotiana alata plant defensin 1 (...    35   0.002
2lj7_A mol:protein length:47  Defensin Lc-def                          30   0.080
>2ksk_A mol:protein length:71  Sugarcane defensin 5
          Length = 71

 Score =  149 bits (377), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRE 60
          HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRE
Sbjct: 1  HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRE 60

Query: 61 RAAATLRWPGL 71
          RAAATLRWPGL
Sbjct: 61 RAAATLRWPGL 71
>4uj0_B mol:protein length:49  FLOWER-SPECIFIC GAMMA-THIONIN-LIKE
          PROTEIN/AC
          Length = 49

 Score = 38.1 bits (87), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 8  ICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          ICK+ S  + G C  D  C   C+K  E +TGG C+     ++C CTKPC
Sbjct: 4  ICKAPSQTFPGLCFMDSSCRKYCIK--EKFTGGHCSKLQ--RKCLCTKPC 49
>4uj0_A mol:protein length:49  FLOWER-SPECIFIC GAMMA-THIONIN-LIKE
          PROTEIN/AC
          Length = 49

 Score = 38.1 bits (87), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 8  ICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          ICK+ S  + G C  D  C   C+K  E +TGG C+     ++C CTKPC
Sbjct: 4  ICKAPSQTFPGLCFMDSSCRKYCIK--EKFTGGHCSKLQ--RKCLCTKPC 49
>1gps_A mol:protein length:47  GAMMA-1-P THIONIN
          Length = 47

 Score = 36.6 bits (83), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 8  ICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          IC+ RS  +KG C+ + +C   C  + E + GG C+G  PF++C C + C
Sbjct: 2  ICRRRSAGFKGPCMSNKNCAQVC--QQEGWGGGNCDG--PFRRCKCIRQC 47
>1gpt_A mol:protein length:47  GAMMA-1-H THIONIN
          Length = 47

 Score = 35.4 bits (80), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 8  ICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          IC+ RS  +KG C+ + +C   C++  E + GG C+G  P ++C C + C
Sbjct: 2  ICRRRSAGFKGPCVSNKNCAQVCMQ--EGWGGGNCDG--PLRRCKCMRRC 47
>4cqk_N mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_M mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_L mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_K mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_J mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_I mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_H mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_G mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_F mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_E mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_D mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_C mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_B mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4cqk_A mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4ab0_B mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4ab0_A mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4aaz_B mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>4aaz_A mol:protein length:47  FLOWER-SPECIFIC DEFENSIN
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>1mr4_A mol:protein length:47  Nicotiana alata plant defensin 1
          (NaD1)
          Length = 47

 Score = 35.0 bits (79), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          CK+ S+ + G CI    C  AC+  SE +T G C+     ++C CTKPC
Sbjct: 3  CKTESNTFPGICITKPPCRKACI--SEKFTDGHCSK--ILRRCLCTKPC 47
>2lj7_A mol:protein length:47  Defensin Lc-def
          Length = 47

 Score = 30.4 bits (67), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 9  CKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPC 57
          C++ S  +KG CI D +CN  C KE E    G C  R  F+ C+CT+ C
Sbjct: 3  CENLSDSFKGPCIPDGNCNKHC-KEKEHLLSGRC--RDDFR-CWCTRNC 47
  Database: pdb_seqres.txt
    Posted date:  Aug 13, 2016 10:30 PM
  Number of letters in database: 90,237,850
  Number of sequences in database:  367,451
  
Lambda     K      H
   0.323    0.136    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 367451
Number of Hits to DB: 16,076,948
Number of extensions: 738760
Number of successful extensions: 555
Number of sequences better than 1.0e-01: 36
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 36
Length of query: 71
Length of database: 90,237,850
Length adjustment: 41
Effective length of query: 30
Effective length of database: 75,172,359
Effective search space: 2255170770
Effective search space used: 2255170770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)